PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010096015.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C2H2
Protein Properties Length: 307aa    MW: 32733.5 Da    PI: 9.0792
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010096015.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.00019101123123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C+ C++ Fs++  L  H++ H
  XP_010096015.1 101 FSCNFCKREFSTSQALGGHQNAH 123
                     89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.94E-698128No hitNo description
Gene3DG3DSA:3.30.160.605.1E-499127IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.531101128IPR007087Zinc finger, C2H2
PROSITE patternPS000280103123IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MGDGLGTEAC PSEASSISAA SDGDENKKMM IMKMKMKEPE VPEQVPGSSS RLLLDLKLSN  60
GKSIGGSKLE LNLFDTLSPG SGLKSNINEP SDEKNEQTRV FSCNFCKREF STSQALGGHQ  120
NAHKQERALA KRRQGIDLGA LSSSHYPYYP YYSSFSPAHS NLYGSNFRSS LGVRMDSMIH  180
KPNSAYSWSG SATGGYRYGH EIAGTSTWSR QAAAMNSHRP IDHRLSTDGF QARNIGGGLG  240
LGGNITCGVT SSRIEENGAL RNNFGVSGTN VGVNPAIGGA DLGRRGVEPL KKNHSDAPAG  300
LDLSLKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010096015.10.0Zinc finger protein 1
TrEMBLW9R0J00.0W9R0J0_9R
STRINGPOPTR_0025s00650.13e-64(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18223074
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01860.17e-19C2H2 family protein